Bioconductor Rna seq

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973

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RNA seq wgcna

updated 4.9 years ago by Peter Langfelder ★ 3.0k • written 4.9 years ago by agustin.gonvi ▴ 20

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888

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sgseq alternative splicing rna seq

updated 4.5 years ago by Leonard Goldstein ▴ 200 • written 4.5 years ago by 116100016 • 0

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3.2k

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batch effect limma rna seq DE

updated 4.1 years ago by Steve Lianoglou ★ 13k • written 4.1 years ago by svlachavas ▴ 830

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1.9k

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rna seq trimmomatic trimming adapter trimming paired analysis

5.0 years ago Mozart ▴ 30

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903

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edger RNA Seq

updated 4.5 years ago by James W. MacDonald 65k • written 4.5 years ago by abf ▴ 30

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1.3k

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limma voom RNA Seq Time-course experiments

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by mahes.muniandy • 0

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653

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RNA seq cpm

updated 4.1 years ago by Kevin Blighe ★ 3.9k • written 4.1 years ago by isabel.pieterse • 0

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783

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rna seq SGSeq Alternative splicing

updated 4.6 years ago by Leonard Goldstein ▴ 200 • written 4.6 years ago by 116100016 • 0

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951

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volcano plot rna seq

updated 4.7 years ago by Michael Love 42k • written 4.7 years ago by adeler001 • 0

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552

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deseq2 likelihood ratio rna seq wald test

updated 4.6 years ago by Michael Love 42k • written 4.6 years ago by adeler001 • 0

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1.6k

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heatmap.2 hierarchical clustering microarray RNA seq DEG

6.2 years ago lawarde.ankita1 ▴ 30

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2.6k

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deseq2 mahattan plot RNA Seq

updated 3.6 years ago by bernatgel ▴ 150 • written 4.6 years ago by adeler001 • 0

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497

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rna seq

4.5 years ago adeler001 • 0

13 results • Page 1 of 1

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Comment: Can't post a question containing code? by NATASHA • 0

did you find a solution? I´m having the same problem

Comment: error by NATASHA • 0

Please ignore, i didnt copy all the scrip

Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>

Comment: How to use spike-in information (sequences from another species) with DESeq2::DE by maria.soler • 0

Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…